Think instead of standardized OFFICE protocol, they are looking for standardized INDIVIDUAL PATIENT protocol.
Suggest that you develop standardized form based on same info already have in office protocol that can be kept in each patients chart listing dx requiring anticoagulation and protocol desired, extra space for specialized order, have MD sign and review periodically by doc (minimum yearly). MD's should sign off on lab results to show reviewed and periodically note "continue med protocal".
Run that form up the flagpole er past pharmacy board and should past muster.
Good article for review/info to consider:
Warfarin Therapy: Evolving Strategies in